PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016500805.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 402aa    MW: 44574.2 Da    PI: 9.8482
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016500805.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055173195223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      C+ Cg+ F   +nL+ H+ + H
  XP_016500805.1 173 ICSECGEIFMKLENLELHQAVrH 195
                     5******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.933172200IPR007087Zinc finger, C2H2
PROSITE patternPS000280174195IPR007087Zinc finger, C2H2
SuperFamilySSF563992.69E-22197401No hitNo description
Gene3DG3DSA:3.90.228.101.8E-11197400IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAKSKRNPSI KRSKQSSKSR SSSHGQKEEK PHSWAVVRSL FTCKHLQARP EQQIILKEEK  60
IPKCEGERRD DDNNNDKKCK KMKCSGSICS NTKVMHRPEP SPSPPKGRSC KNDGSTKVNL  120
NNSFSSASSS LHSASSPATS SLRGMPFRKL SGCYECRMVV DPIARDPSLR STICSECGEI  180
FMKLENLELH QAVRHAVTEL GPEDTSRNIV EIIFQSSWLN KKTPVCKIDR ILKIRNTPTT  240
ISRFEEYRDG IKSKATNLPK KHPRCIADGN ELLRFLCTTF ICSLGLNGSS NLCTLPNCNV  300
CTIIKNGFKL ATTDGTKKGI LTTATSGKAH DSTRVVSHDD NDKRAMLVCR VIAGRVKKTL  360
DGNLEEFDSI AGAAGVYSNL DELYVFNPKA ILPCFVVIYK GF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754503e-96HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016500805.10.0PREDICTED: uncharacterized protein LOC107819234 isoform X1
TrEMBLK4D6C60.0K4D6C6_SOLLC; Uncharacterized protein
STRINGSolyc11g013220.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107231517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-100C2H2-like zinc finger protein